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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PhylogeneticEM" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM'
version: 1.7.0
doi: 10.1111/rssb.12206
identifiers:
- type: doi
  value: 10.32614/CRAN.package.PhylogeneticEM
abstract: Implementation of the automatic shift detection method for Brownian Motion
  (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on phylogenies. Some tools
  to handle equivalent shifts configurations are also available. See Bastide et al.
  (2017) <https://doi.org/10.1111/rssb.12206> and Bastide et al. (2018) <https://doi.org/10.1093/sysbio/syy005>.
authors:
- family-names: Bastide
  given-names: Paul
  email: paul.bastide@m4x.org
preferred-citation:
  type: article
  title: Detection of adaptive shifts on phylogenies by using shifted stochastic processes
    on a tree
  authors:
  - family-names: Bastide
    given-names: Paul
    email: paul.bastide@m4x.org
  - family-names: Mariadassou
    given-names: Mahendra
  - family-names: Robin
    given-names: Stephane
  journal: 'Journal of the Royal Statistical Society: Series B (Statistical Methodology)'
  month: '9'
  year: '2017'
  volume: '79'
  issue: '4'
  issn: 1467-9868
  doi: 10.1111/rssb.12206
  url: https://doi.org/10.1111/rssb.12206
  start: '1067'
  end: '1093'
repository: https://pbastide.r-universe.dev
repository-code: https://github.com/pbastide/PhylogeneticEM
commit: c92c9054eabf7739465e2c18ae1a89ea216278d8
url: https://github.com/pbastide/PhylogeneticEM
contact:
- family-names: Bastide
  given-names: Paul
  email: paul.bastide@m4x.org